In the movie's story, just before the completion of the Academy City space elevator "Endymion", the main characters Kamijou and Index encounter a level 0 girl named Arisa. The Magicians are after Arisa, and they attack Academy City. A female leader named Shattoaura leads a unit from Academy City against the attack. Kamijou and Index learn from Stiyl that Arisa is key to a brewing war between the sides of Magic and Science. 
(Source: Anime News Network)

Index is still a fugitive, and many powerful magical organizations and individuals want to take her to use the books in her memory, eliminating her in the process. War between those organizations is also starting to emerge. Index can only rely on her friend Touma, who has always protected her, along with Misaka and other friends from the Academy. 
 
(Source: Anime News Network)

Bonus animation featuring Index-tan included with the BD special edition of the Toaru Majutsu no Index: Endymion no Kiseki movie.

Just before the completion of the Academy City space elevator "Endymion", the main characters Kamijou Touma and Index encounter a level 0 girl named Arisa. The Magicians are after Arisa, and they attack Academy City. A female leader named Shattoaura leads a unit from Academy City against the attack. Kamijou and Index learn from Stiyl that Arisa is key to a brewing war between the sides of Magic and Science. When science and magic cross paths, the story begins with Endymion as its stage!


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