15 years ago, Daiichi Yachiyo Maru, a cargo ship, was crashed into a large iceberg in northern the Pacific Ocean, and sank. The captain and a crew were died. 
Now, in Nishitama, a ship designer of Yatsushiro Shipbuilder, which belonged to Yatsushiro Financial Combine, was suffered from a sudden heart attack while he was driving, and died in a traffic accident. 
Six months has passed since then. Conan, Ran, and Kogoro are enjoying their trip in the Aphrodite. The Aphrodite is a luxury liner, and it is sailing for the Pacific Ocean as its maiden voyage. However, there is a suspicious person, and finally a murder occurs. 
It is the beginning of a horrible plot occurred in the ocean where there is no place to escape from. 
(Source: AnimeNfo)

Kudo Shinichi is a seventeen year-old high school detective whom people call the "Modern Sherlock Holmes." However, one night after a date with his childhood sweetheart, Ran, Shinichi witnessed an illegal trade and, caught off his guard, was knocked unconscious and fed a drug that was supposed to kill him... but he woke up and found himself shrunken to a seven year-old. In order to track down the men who did this to him, Shinichi hid his identity and lived with Ran, whose father happened to be a hopeless detective, and with that came a series of murders and mysteries that he must solve. 
(Source: Anime News Network)
 
Note: 
- Includes Keisatsu Gakkou-hen - Wild Police Story in episodes 1029, 1038, 1042, 1061 
- Episodes 11, 52, 76, 118, 162, 184, 208, 342, 356, 449, 452, 487, 488, 489, 490, 515, 516, 521, 522, 651, 734, 804, 805, 927, 928 aired with a runtime of ~50 minutes as opposed to the standard 25 minute long episode. 
- Episodes 96, 129, 174, 219, 263, 304, 383, 479 aired with a runtime of ~90 minutes as opposed to the standard 25 minute long episode. 
- Episode 345, 425 aired with a runtime of ~115 minutes as opposed to the standard 25 minute long episode.

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