Twelve thousand years after Genesis of Aquarion on the planet Vega, Amata Sora meets Mikono Suzushiro. Together, part of the organization Neo-DEAVA, they must defend their planet from relentless invaders attacking from Altair, a sister planet devoid of females. These two unexpected heroes, along with other young men and women, known as Elements, pilot massive robots called Aquaria, in defense of their planet, in a battle against malicious assailants trying to abduct woman from their home planet. 
(Source: One Peace Books)
 
Note: Includes 2 extra chapters.

In a distant future, humanity is once again facing the threat of the "Shadow Angels," mystical creatures who have returned after 12,000 years of absence. They attack human cities and kidnap their inhabitants in order to drain their "prana" (vital energy). To fight against them, youngsters with special powers from arround the world were gathered and trained to pilot the "vector machines," three ancient ships that together form mankind's ultimate weapon, "Aquarion." The story revolves mainly around Apollo, a teenager rumored to be the reincarnation of Apolonius, a fallen angel who fought against his own kind to protect mankind.

The "Abductors" Invaders from Altea come to Earth with only one purpose, to harvest humans. DEAVA the Aquaria Academy exists to train men and women to use Aquaria, but they cannot ever merge because of Guize stones, these block an "unholy union" between genders. The story follows Amata and Mikono in their enrollment into DEAVA, and fight their fight with Abductors. 
(Source: FUNimation)

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