In an alternate universe to the original Clannad anime, Okazaki Tomoya is dating Sakagami Tomoyo in the 24th and final episode of Clannad. 
When Tomoyo is elected Student Council President, her dream to save the school's cherry blossom trees from being cut down begins to come to fruition. However, her never-ending duties and bad rumors about their relationship spread by fellow students due to Tomoya's reputation as a delinquent create a rift between the two. As Tomoya watches Tomoyo rise higher and higher into the distance, their relationship is stretched to the limit by a society that threatens to break them apart.

Tomoya is a bitter, third year high school student. His mother passed away, causing his father to resort to alcohol and gambling. Tomoya is distant with his father and has become a delinquent in the years since his mother's death. Walking to school, he meets Nagisa Furukawa who is a year older but is repeating the grade due to illness. She is alone, as most of her friends have moved on. The two begin hanging out, and as time goes by, Tomoya finds his life shifting in a new direction. 
 
(Source: Sentai Filmworks)

The story centers on Tomoyo's arc from the Clannad visual novel.

Manga adaptation of the visual novel Tomoyo After: It's a Wonderful Life. Can be taken as what happens after the Tomoyo route from the Clannad game, with Tomoyo and Tomoya being a pair.

Included in the 8th and final DVD of Clannad ~After Story~ is an extra episode set in an alternate universe. Here, Fujibayashi Kyou is the main heroine in place of Furukawa Nagisa. 
Love can be wonderfully exciting, but also extremely painful. Fujibayashi Ryou, Kyou's sister, is in love with Okazaki Tomoya, the male protagonist. With the help of Kyou, Ryou manages to sum up the courage to ask him out and now Tomoya and Ryou are a couple. However, as things progress, Kyou begins to acknowledge her feelings for Tomoya, and a love-triangle is formed. 
As everything is revealed, the sisters learn the pains of love and try to decide between the two loves of their life: Tomoya, or each other. 
[Written by MAL Rewrite]

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